parts of a scientific paper

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How to Write a Research Paper

Writing a research paper is a bit more difficult that a standard high school essay. You need to site sources, use academic data and show scientific examples. Before beginning, you’ll need guidelines for how to write a research paper.

Start the Research Process

Before you begin writing the research paper, you must do your research. It is important that you understand the subject matter, formulate the ideas of your paper, create your thesis statement and learn how to speak about your given topic in an authoritative manner. You’ll be looking through online databases, encyclopedias, almanacs, periodicals, books, newspapers, government publications, reports, guides and scholarly resources. Take notes as you discover new information about your given topic. Also keep track of the references you use so you can build your bibliography later and cite your resources.

Develop Your Thesis Statement

When organizing your research paper, the thesis statement is where you explain to your readers what they can expect, present your claims, answer any questions that you were asked or explain your interpretation of the subject matter you’re researching. Therefore, the thesis statement must be strong and easy to understand. Your thesis statement must also be precise. It should answer the question you were assigned, and there should be an opportunity for your position to be opposed or disputed. The body of your manuscript should support your thesis, and it should be more than a generic fact.

Create an Outline

Many professors require outlines during the research paper writing process. You’ll find that they want outlines set up with a title page, abstract, introduction, research paper body and reference section. The title page is typically made up of the student’s name, the name of the college, the name of the class and the date of the paper. The abstract is a summary of the paper. An introduction typically consists of one or two pages and comments on the subject matter of the research paper. In the body of the research paper, you’ll be breaking it down into materials and methods, results and discussions. Your references are in your bibliography. Use a research paper example to help you with your outline if necessary.

Organize Your Notes

When writing your first draft, you’re going to have to work on organizing your notes first. During this process, you’ll be deciding which references you’ll be putting in your bibliography and which will work best as in-text citations. You’ll be working on this more as you develop your working drafts and look at more white paper examples to help guide you through the process.

Write Your Final Draft

After you’ve written a first and second draft and received corrections from your professor, it’s time to write your final copy. By now, you should have seen an example of a research paper layout and know how to put your paper together. You’ll have your title page, abstract, introduction, thesis statement, in-text citations, footnotes and bibliography complete. Be sure to check with your professor to ensure if you’re writing in APA style, or if you’re using another style guide.

Scientific Papers

Scientific papers are for sharing your own original research work with other scientists or for reviewing the research conducted by others. As such, they are critical to the evolution of modern science, in which the work of one scientist builds upon that of others. To reach their goal, papers must aim to inform, not impress. They must be highly readable — that is, clear, accurate, and concise. They are more likely to be cited by other scientists if they are helpful rather than cryptic or self-centered.

Scientific papers typically have two audiences: first, the referees, who help the journal editor decide whether a paper is suitable for publication; and second, the journal readers themselves, who may be more or less knowledgeable about the topic addressed in the paper. To be accepted by referees and cited by readers, papers must do more than simply present a chronological account of the research work. Rather, they must convince their audience that the research presented is important, valid, and relevant to other scientists in the same field. To this end, they must emphasize both the motivation for the work and the outcome of it, and they must include just enough evidence to establish the validity of this outcome.

Papers that report experimental work are often structured chronologically in five sections: first, Introduction ; then Materials and Methods , Results , and Discussion (together, these three sections make up the paper's body); and finally, Conclusion .

The Introduction section clarifies the motivation for the work presented and prepares readers for the structure of the paper.
The Materials and Methods section provides sufficient detail for other scientists to reproduce the experiments presented in the paper. In some journals, this information is placed in an appendix, because it is not what most readers want to know first.
The Results and Discussion sections present and discuss the research results, respectively. They are often usefully combined into one section, however, because readers can seldom make sense of results alone without accompanying interpretation — they need to be told what the results mean.
The Conclusion section presents the outcome of the work by interpreting the findings at a higher level of abstraction than the Discussion and by relating these findings to the motivation stated in the Introduction .

(Papers reporting something other than experiments, such as a new method or technology, typically have different sections in their body, but they include the same Introduction and Conclusion sections as described above.)

Although the above structure reflects the progression of most research projects, effective papers typically break the chronology in at least three ways to present their content in the order in which the audience will most likely want to read it. First and foremost, they summarize the motivation for, and the outcome of, the work in an abstract, located before the Introduction . In a sense, they reveal the beginning and end of the story — briefly — before providing the full story. Second, they move the more detailed, less important parts of the body to the end of the paper in one or more appendices so that these parts do not stand in the readers' way. Finally, they structure the content in the body in theorem-proof fashion, stating first what readers must remember (for example, as the first sentence of a paragraph) and then presenting evidence to support this statement.

The introduction

First, provide some context to orient those readers who are less familiar with your topic and to establish the importance of your work.
Second, state the need for your work, as an opposition between what the scientific community currently has and what it wants.
Third, indicate what you have done in an effort to address the need (this is the task).
Finally, preview the remainder of the paper to mentally prepare readers for its structure, in the object of the document.

Context and need

At the beginning of the Introduction section, the context and need work together as a funnel: They start broad and progressively narrow down to the issue addressed in the paper. To spark interest among your audience — referees and journal readers alike — provide a compelling motivation for the work presented in your paper: The fact that a phenomenon has never been studied before is not, in and of itself, a reason to study that phenomenon.

Write the context in a way that appeals to a broad range of readers and leads into the need. Do not include context for the sake of including context: Rather, provide only what will help readers better understand the need and, especially, its importance. Consider anchoring the context in time, using phrases such as recently , in the past 10 years , or since the early 1990s . You may also want to anchor your context in space (either geographically or within a given research field).

Convey the need for the work as an opposition between actual and desired situations. Start by stating the actual situation (what we have) as a direct continuation of the context. If you feel you must explain recent achievements in much detail — say, in more than one or two paragraphs — consider moving the details to a section titled State of the art (or something similar) after the Introduction , but do provide a brief idea of the actual situation in the Introduction . Next, state the desired situation (what we want). Emphasize the contrast between the actual and desired situations with such words as but , however, or unfortunately .

One elegant way to express the desired part of the need is to combine it with the task in a single sentence. This sentence expresses first the objective, then the action undertaken to reach this objective, thus creating a strong and elegant connection between need and task. Here are three examples of such a combination:

To confirm this assumption , we studied the effects of a range of inhibitors of connexin channels . . . on . . .

To assess whether such multiple-coil sensors perform better than single-signal ones , we tested two of them — the DuoPXK and the GEMM3 — in a field where . . . To form a better view of the global distribution and infectiousness of this pathogen , we examined 1645 postmetamorphic and adult amphibians collected from 27 countries between 1984 and 2006 for the presence of . . .

Task and object

An Introduction is usually clearer and more logical when it separates what the authors have done (the task) from what the paper itself attempts or covers (the object of the document). In other words, the task clarifies your contribution as a scientist, whereas the object of the document prepares readers for the structure of the paper, thus allowing focused or selective reading.

For the task,

use whoever did the work (normally, you and your colleagues) as the subject of the sentence: we or perhaps the authors;
use a verb expressing a research action: measured , calculated , etc.;
set that verb in the past tense.

The three examples below are well-formed tasks.

To confirm this assumption, we studied the effects of a range of inhibitors of connexin channels, such as the connexin mimetic peptides Gap26 and Gap27 and anti-peptide antibodies, on calcium signaling in cardiac cells and HeLa cells expressing connexins.

During controlled experiments, we investigated the influence of the HMP boundary conditions on liver flows.

To tackle this problem, we developed a new software verification technique called oblivious hashing, which calculates the hash values based on the actual execution of the program.

The list below provides examples of verbs that express research actions:

For the object of the document,

use the document itself as the subject of the sentence: this paper , this letter , etc.;
use a verb expressing a communication action: presents , summarizes , etc.;
set the verb in the present tense.

The three examples below are suitable objects of the document for the three tasks shown above, respectively.

This paper clarifies the role of CxHc on calcium oscillations in neonatal cardiac myocytes and calcium transients induced by ATP in HL-cells originated from cardiac atrium and in HeLa cells expressing connexin 43 or 26. This paper presents the flow effects induced by increasing the hepatic-artery pressure and by obstructing the vena cava inferior. This paper discusses the theory behind oblivious hashing and shows how this approach can be applied for local software tamper resistance and remote code authentication.

The list below provides examples of verbs that express communication actions:

Even the most logical structure is of little use if readers do not see and understand it as they progress through a paper. Thus, as you organize the body of your paper into sections and perhaps subsections, remember to prepare your readers for the structure ahead at all levels. You already do so for the overall structure of the body (the sections) in the object of the document at the end of the Introduction . You can similarly prepare your readers for an upcoming division into subsections by introducing a global paragraph between the heading of a section and the heading of its first subsection. This paragraph can contain any information relating to the section as a whole rather than particular subsections, but it should at least announce the subsections, whether explicitly or implicitly. An explicit preview would be phrased much like the object of the document: "This section first . . . , then . . . , and finally . . . "

Although papers can be organized into sections in many ways, those reporting experimental work typically include Materials and Methods , Results , and Discussion in their body. In any case, the paragraphs in these sections should begin with a topic sentence to prepare readers for their contents, allow selective reading, and — ideally — get a message across.

Materials and methods

Results and discussion.

When reporting and discussing your results, do not force your readers to go through everything you went through in chronological order. Instead, state the message of each paragraph upfront: Convey in the first sentence what you want readers to remember from the paragraph as a whole. Focus on what happened, not on the fact that you observed it. Then develop your message in the remainder of the paragraph, including only that information you think you need to convince your audience.

The conclusion

At the end of your Conclusion , consider including perspectives — that is, an idea of what could or should still be done in relation to the issue addressed in the paper. If you include perspectives, clarify whether you are referring to firm plans for yourself and your colleagues ("In the coming months, we will . . . ") or to an invitation to readers ("One remaining question is . . . ").

If your paper includes a well-structured Introduction and an effective abstract, you need not repeat any of the Introduction in the Conclusion . In particular, do not restate what you have done or what the paper does. Instead, focus on what you have found and, especially, on what your findings mean. Do not be afraid to write a short Conclusion section: If you can conclude in just a few sentences given the rich discussion in the body of the paper, then do so. (In other words, resist the temptation to repeat material from the Introduction just to make the Conclusio n longer under the false belief that a longer Conclusion will seem more impressive.)

The abstract

Typically, readers are primarily interested in the information presented in a paper's Introduction and Conclusion sections. Primarily, they want to know the motivation for the work presented and the outcome of this work. Then (and only then) the most specialized among them might want to know the details of the work. Thus, an effective abstract focuses on motivation and outcome; in doing so, it parallels the paper's Introduction and Conclusion .

Accordingly, you can think of an abstract as having two distinct parts — motivation and outcome — even if it is typeset as a single paragraph. For the first part, follow the same structure as the Introduction section of the paper: State the context, the need, the task, and the object of the document. For the second part, mention your findings (the what ) and, especially, your conclusion (the so what — that is, the interpretation of your findings); if appropriate, end with perspectives, as in the Conclusion section of your paper.

Although the structure of the abstract parallels the Introduction and Conclusion sections, it differs from these sections in the audience it addresses. The abstract is read by many different readers, from the most specialized to the least specialized among the target audience. In a sense, it should be the least specialized part of the paper. Any scientist reading it should be able to understand why the work was carried out and why it is important (context and need), what the authors did (task) and what the paper reports about this work (object of the document), what the authors found (findings), what these findings mean (the conclusion), and possibly what the next steps are (perspectives). In contrast, the full paper is typically read by specialists only; its Introduction and Conclusion are more detailed (that is, longer and more specialized) than the abstract.

An effective abstract stands on its own — it can be understood fully even when made available without the full paper. To this end, avoid referring to figures or the bibliography in the abstract. Also, introduce any acronyms the first time you use them in the abstract (if needed), and do so again in the full paper (see Mechanics: Using abbreviations ).

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Parts of a Scientific & Scholarly Paper

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Different sections are needed in different types of scientific papers (lab reports, literature reviews, systematic reviews, methods papers, research papers, etc.). Projects that overlap with the social sciences or humanities may have different requirements. Generally, however, you'll need to include:

INTRODUCTION (Background)

METHODS SECTION (Materials and Methods)

What is a title

Titles have two functions: to identify the main topic or the message of the paper and to attract readers.

The title will be read by many people. Only a few will read the entire paper, therefore all words in the title should be chosen with care. Too short a title is not helpful to the potential reader. Too long a title can sometimes be even less meaningful. Remember a title is not an abstract. Neither is a title a sentence.

What makes a good title?

A good title is accurate, complete, and specific. Imagine searching for your paper in PubMed. What words would you use?

Use the fewest possible words that describe the contents of the paper.
Avoid waste words like "Studies on", or "Investigations on".
Use specific terms rather than general.
Use the same key terms in the title as the paper.
Watch your word order and syntax.

The abstract is a miniature version of your paper. It should present the main story and a few essential details of the paper for readers who only look at the abstract and should serve as a clear preview for readers who read your whole paper. They are usually short (250 words or less).

The goal is to communicate:

What was done?
Why was it done?
How was it done?
What was found?

A good abstract is specific and selective. Try summarizing each of the sections of your paper in a sentence two. Do the abstract last, so you know exactly what you want to write.

Use 1 or more well developed paragraphs.
Use introduction/body/conclusion structure.
Present purpose, results, conclusions and recommendations in that order.
Make it understandable to a wide audience.
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Last Updated: Sep 5, 2023 1:59 PM
URL: https://libraryguides.umassmed.edu/scientific-writing

Research Guides

BSCI 1510L Literature and Stats Guide: 3.2 Components of a scientific paper

1 What is a scientific paper?
2 Referencing and accessing papers
2.1 Literature Cited
2.2 Accessing Scientific Papers
2.3 Traversing the web of citations
2.4 Keyword Searches
3 Style of scientific writing
3.1 Specific details regarding scientific writing

3.2 Components of a scientific paper

4 For further information
Appendix A: Calculation Final Concentrations
1 Formulas in Excel
2 Basic operations in Excel
3 Measurement and Variation
3.1 Describing Quantities and Their Variation
3.2 Samples Versus Populations
3.3 Calculating Descriptive Statistics using Excel
4 Variation and differences
5 Differences in Experimental Science
5.1 Aside: Commuting to Nashville
5.2 P and Detecting Differences in Variable Quantities
5.3 Statistical significance
5.4 A test for differences of sample means: 95% Confidence Intervals
5.5 Error bars in figures
5.6 Discussing statistics in your scientific writing
6 Scatter plot, trendline, and linear regression
7 The t-test of Means
8 Paired t-test
9 Two-Tailed and One-Tailed Tests
10 Variation on t-tests: ANOVA
11 Reporting the Results of a Statistical Test
12 Summary of statistical tests
1 Objectives
2 Project timeline
3 Background
4 Previous work in the BSCI 111 class
5 General notes about the project
6 About the paper
7 References

Nearly all journal articles are divided into the following major sections: abstract, introduction, methods, results, discussion, and references. Usually the sections are labeled as such, although often the introduction (and sometimes the abstract) is not labeled. Sometimes alternative section titles are used. The abstract is sometimes called the "summary", the methods are sometimes called "materials and methods", and the discussion is sometimes called "conclusions". Some journals also include the minor sections of "key words" following the abstract, and "acknowledgments" following the discussion. In some journals, the sections may be divided into subsections that are given descriptive titles. However, the general division into the six major sections is nearly universal.

3.2.1 Abstract

The abstract is a short summary (150-200 words or less) of the important points of the paper. It does not generally include background information. There may be a very brief statement of the rationale for conducting the study. It describes what was done, but without details. It also describes the results in a summarized way that usually includes whether or not the statistical tests were significant. It usually concludes with a brief statement of the importance of the results. Abstracts do not include references. When writing a paper, the abstract is always the last part to be written.

The purpose of the abstract is to allow potential readers of a paper to find out the important points of the paper without having to actually read the paper. It should be a self-contained unit capable of being understood without the benefit of the text of the article . It essentially serves as an "advertisement" for the paper that readers use to determine whether or not they actually want to wade through the entire paper or not. Abstracts are generally freely available in electronic form and are often presented in the results of an electronic search. If searchers do not have electronic access to the journal in which the article is published, the abstract is the only means that they have to decide whether to go through the effort (going to the library to look up the paper journal, requesting a reprint from the author, buying a copy of the article from a service, requesting the article by Interlibrary Loan) of acquiring the article. Therefore it is important that the abstract accurately and succinctly presents the most important information in the article.

3.2.2 Introduction

The introduction provides the background information necessary to understand why the described experiment was conducted. The introduction should describe previous research on the topic that has led to the unanswered questions being addressed by the experiment and should cite important previous papers that form the background for the experiment. The introduction should also state in an organized fashion the goals of the research, i.e. the particular, specific questions that will be tested in the experiments. There should be a one-to-one correspondence between questions raised in the introduction and points discussed in the conclusion section of the paper. In other words, do not raise questions in the introduction unless you are going to have some kind of answer to the question that you intend to discuss at the end of the paper.

You may have been told that every paper must have a hypothesis that can be clearly stated. That is often true, but not always. If your experiment involves a manipulation which tests a specific hypothesis, then you should clearly state that hypothesis. On the other hand, if your experiment was primarily exploratory, descriptive, or measurative, then you probably did not have an a priori hypothesis, so don't pretend that you did and make one up. (See the discussion in the introduction to Experiment 4 for more on this.) If you state a hypothesis in the introduction, it should be a general hypothesis and not a null or alternative hypothesis for a statistical test. If it is necessary to explain how a statistical test will help you evaluate your general hypothesis, explain that in the methods section.

A good introduction should be fairly heavy with citations. This indicates to the reader that the authors are informed about previous work on the topic and are not working in a vacuum. Citations also provide jumping-off points to allow the reader to explore other tangents to the subject that are not directly addressed in the paper. If the paper supports or refutes previous work, readers can look up the citations and make a comparison for themselves.

"Do not get lost in reviewing background information. Remember that the Introduction is meant to introduce the reader to your research, not summarize and evaluate all past literature on the subject (which is the purpose of a review paper). Many of the other studies you may be tempted to discuss in your Introduction are better saved for the Discussion, where they become a powerful tool for comparing and interpreting your results. Include only enough background information to allow your reader to understand why you are asking the questions you are and why your hyptheses are reasonable ones. Often, a brief explanation of the theory involved is sufficient. …

Write this section in the past or present tense, never in the future. " (Steingraber et al. 1985)

3.2.3 Methods (taken verbatim from Steingraber et al. 1985)

The function of this section is to describe all experimental procedures, including controls. The description should be complete enough to enable someone else to repeat your work. If there is more than one part to the experiment, it is a good idea to describe your methods and present your results in the same order in each section. This may not be the same order in which the experiments were performed -it is up to you to decide what order of presentation will make the most sense to your reader.

1. Explain why each procedure was done, i.e., what variable were you measuring and why? Example:

Difficult to understand : First, I removed the frog muscle and then I poured Ringer’s solution on it. Next, I attached it to the kymograph.

Improved: I removed the frog muscle and poured Ringer’s solution on it to prevent it from drying out. I then attached the muscle to the kymograph in order to determine the minimum voltage required for contraction.

2. Experimental procedures and results are narrated in the past tense (what you did, what you found, etc.) whereas conclusions from your results are given in the present tense.

3. Mathematical equations and statistical tests are considered mathematical methods and should be described in this section along with the actual experimental work.

4. Use active rather than passive voice when possible. [Note: see Section 3.1.4 for more about this.] Always use the singular "I" rather than the plural "we" when you are the only author of the paper. Throughout the paper, avoid contractions, e.g. did not vs. didn’t.

5. If any of your methods is fully described in a previous publication (yours or someone else’s), you can cite that instead of describing the procedure again.

Example: The chromosomes were counted at meiosis in the anthers with the standard acetocarmine technique of Snow (1955).

3.2.4 Results (with excerpts from Steingraber et al. 1985)

The function of this section is to summarize general trends in the data without comment, bias, or interpretation. The results of statistical tests applied to your data are reported in this section although conclusions about your original hypotheses are saved for the Discussion section.

Tables and figures should be used when they are a more efficient way to convey information than verbal description. They must be independent units, accompanied by explanatory captions that allow them to be understood by someone who has not read the text. Do not repeat in the text the information in tables and figures, but do cite them, with a summary statement when that is appropriate. Example:

Incorrect: The results are given in Figure 1.

Correct: Temperature was directly proportional to metabolic rate (Fig. 1).

Please note that the entire word "Figure" is almost never written in an article. It is nearly always abbreviated as "Fig." and capitalized. Tables are cited in the same way, although Table is not abbreviated.

Whenever possible, use a figure instead of a table. Relationships between numbers are more readily grasped when they are presented graphically rather than as columns in a table.

Data may be presented in figures and tables, but this may not substitute for a verbal summary of the findings. The text should be understandable by someone who has not seen your figures and tables.

1. All results should be presented, including those that do not support the hypothesis.

2. Statements made in the text must be supported by the results contained in figures and tables.

3. The results of statistical tests can be presented in parentheses following a verbal description.

Example: Fruit size was significantly greater in trees growing alone (t = 3.65, df = 2, p < 0.05).

Simple results of statistical tests may be reported in the text as shown in the preceding example. The results of multiple tests may be reported in a table if that increases clarity. (See Section 11 of the Statistics Manual for more details about reporting the results of statistical tests.) It is not necessary to provide a citation for a simple t-test of means, paired t-test, or linear regression. If you use other tests, you should cite the text or reference you followed to do the test. In your materials and methods section, you should report how you did the test (e.g. using the statistical analysis package of Excel).

It is NEVER appropriate to simply paste the results from statistical software into the results section of your paper. The output generally reports more information than is required and it is not in an appropriate format for a paper.

3.2.4.1 Tables

Do not repeat information in a table that you are depicting in a graph or histogram; include a table only if it presents new information.
It is easier to compare numbers by reading down a column rather than across a row. Therefore, list sets of data you want your reader to compare in vertical form.
Provide each table with a number (Table 1, Table 2, etc.) and a title. The numbered title is placed above the table .
Please see Section 11 of the Excel Reference and Statistics Manual for further information on reporting the results of statistical tests.

3.2.4.2. Figures

These comprise graphs, histograms, and illustrations, both drawings and photographs. Provide each figure with a number (Fig. 1, Fig. 2, etc.) and a caption (or "legend") that explains what the figure shows. The numbered caption is placed below the figure . Figure legend = Figure caption.
Figures submitted for publication must be "photo ready," i.e., they will appear just as you submit them, or photographically reduced. Therefore, when you graduate from student papers to publishable manuscripts, you must learn to prepare figures that will not embarrass you. At the present time, virtually all journals require manuscripts to be submitted electronically and it is generally assumed that all graphs and maps will be created using software rather than being created by hand. Nearly all journals have specific guidelines for the file types, resolution, and physical widths required for figures. Only in a few cases (e.g. sketched diagrams) would figures still be created by hand using ink and those figures would be scanned and labeled using graphics software. Proportions must be the same as those of the page in the journal to which the paper will be submitted.
Graphs and Histograms: Both can be used to compare two variables. However, graphs show continuous change, whereas histograms show discrete variables only. You can compare groups of data by plotting two or even three lines on one graph, but avoid cluttered graphs that are hard to read, and do not plot unrelated trends on the same graph. For both graphs, and histograms, plot the independent variable on the horizontal (x) axis and the dependent variable on the vertical (y) axis. Label both axes, including units of measurement except in the few cases where variables are unitless, such as absorbance.
Drawings and Photographs: These are used to illustrate organisms, experimental apparatus, models of structures, cellular and subcellular structure, and results of procedures like electrophoresis. Preparing such figures well is a lot of work and can be very expensive, so each figure must add enough to justify its preparation and publication, but good figures can greatly enhance a professional article, as your reading in biological journals has already shown.

3.2.5 Discussion (taken from Steingraber et al. 1985)

The function of this section is to analyze the data and relate them to other studies. To "analyze" means to evaluate the meaning of your results in terms of the original question or hypothesis and point out their biological significance.

1. The Discussion should contain at least:

the relationship between the results and the original hypothesis, i.e., whether they support the hypothesis, or cause it to be rejected or modified
an integration of your results with those of previous studies in order to arrive at explanations for the observed phenomena
possible explanations for unexpected results and observations, phrased as hypotheses that can be tested by realistic experimental procedures, which you should describe

2. Trends that are not statistically significant can still be discussed if they are suggestive or interesting, but cannot be made the basis for conclusions as if they were significant.

3. Avoid redundancy between the Results and the Discussion section. Do not repeat detailed descriptions of the data and results in the Discussion. In some journals, Results and Discussions are joined in a single section, in order to permit a single integrated treatment with minimal repetition. This is more appropriate for short, simple articles than for longer, more complicated ones.

4. End the Discussion with a summary of the principal points you want the reader to remember. This is also the appropriate place to propose specific further study if that will serve some purpose, but do not end with the tired cliché that "this problem needs more study." All problems in biology need more study. Do not close on what you wish you had done, rather finish stating your conclusions and contributions.

3.2.6 Title

The title of the paper should be the last thing that you write. That is because it should distill the essence of the paper even more than the abstract (the next to last thing that you write).

The title should contain three elements:

1. the name of the organism studied;

2. the particular aspect or system studied;

3. the variable(s) manipulated.

Do not be afraid to be grammatically creative. Here are some variations on a theme, all suitable as titles:

THE EFFECT OF TEMPERATURE ON GERMINATION OF ZEA MAYS

DOES TEMPERATURE AFFECT GERMINATION OF ZEA MAYS?

TEMPERATURE AND ZEA MAYS GERMINATION: IMPLICATIONS FOR AGRICULTURE

Sometimes it is possible to include the principal result or conclusion in the title:

HIGH TEMPERATURES REDUCE GERMINATION OF ZEA MAYS

Note for the BSCI 1510L class: to make your paper look more like a real paper, you can list all of the other group members as co-authors. However, if you do that, you should list you name first so that we know that you wrote it.

3.2.7 Literature Cited

Please refer to section 2.1 of this guide.

<< Previous: 3.1 Specific details regarding scientific writing
Next: 4 For further information >>
Last Updated: Apr 19, 2023 2:37 PM
URL: https://researchguides.library.vanderbilt.edu/bsci1510L

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Scientific Writing: Sections of a Paper

Sections of a Paper
Common Grammar Mistakes Explained
Citing Sources

Introduction

Materials & Methods

Typically scientific journal articles have the following sections:

Materials & Methods

References used:

Kotsis, S.V. and Chung, K.C. (2010) A Guide for Writing in the Scientific Forum. Plastic and Reconstructive Surgery. 126(5):1763-71. PubMed ID: 21042135

Van Way, C.W. (2007) Writing a Scientific Paper. Nutrition in Clinical Practice. 22: 663-40. PubMed ID: 1804295

What to include:

Background/Objectives: include the hypothesis
Methods: Briefly explain the type of study, sample/population size and description, the design, and any particular techniques for data collection and analysis
Results: Essential data, including statistically significant data (use # & %)
Conclusions: Summarize interpretations of results and explain if hypothesis was supported or rejected
Be concise!
Emphasize the methods and results
Do not copy the introduction
Only include data that is included in the paper
Write the abstract last
Avoid jargon and ambiguity
Should stand-alone

Additional resources: Fisher, W. E. (2005) Abstract Writing. Journal of Surgical Research. 128(2):162-4. PubMed ID: 16165161 Peh, W.C. and Ng, K.H. (2008) Abstract and keywords. Singapore Medical Journal. 49(9): 664-6. PubMed ID: 18830537

How does your study fit into what has been done
Explain evidence using limited # of references
Why is it important
How does it relate to previous research
State hypothesis at the end
Use present tense
Be succinct
Clearly state objectives
Explain important work done

Additional resources: Annesley, T. M. (2010) "It was a cold and rainy night": set the scene with a good introduction. Clinical Chemistry. 56(5):708-13. PubMed ID: 20207764 Peh, W.C. and Ng, K.H. (2008) Writing the introduction. Singapore Medical Journal. 49(10):756-8. PubMed ID: 18946606

What was done
Include characteristics
Describe recruitment, participation, withdrawal, etc.
Type of study (RCT, cohort, case-controlled, etc.)
Equipment used
Measurements made
Usually the final paragraph
Include enough details so others can duplicate study
Use past tense
Be direct and precise
Include any preliminary results
Ask for help from a statistician to write description of statistical analysis
Be systematic

Additional resources: Lallet, R. H. (2004) How to write the methods section of a research paper. Respiratory Care. 49(10): 1229-32. PubMed ID: 15447808 Ng, K.H. and Peh, W.C. (2008) Writing the materials and methods. Singapore Medical Journal. 49(11): 856-9. PubMed ID: 19037549

Describe study sample demographics
Include statistical significance and the statistical test used
Use tables and figures when appropriate
Present in a logical sequence
Facts only - no citations or interpretations
Should stand alone (not need written descriptions to be understood)
Include title, legend, and axes labels
Include raw numbers with percentages
General phrases (significance, show trend, etc. should be used with caution)
Data is plural ("Our data are" is correct, "Our data is" is in-correct)

Additional resources: Ng, K.H and Peh, W.C. (2008) Writing the results. Singapore Medical Journal. 49(12):967-9. PubMed ID: 19122944 Streiner, D.L. (2007) A shortcut to rejection: how not to write the results section of a paper. Canadian Journal of Psychiatry. 52(6):385-9. PubMed ID: 17696025

Did you reject your null hypothesis?
Include a focused review of literature in relation to results
Explain meaning of statistical findings
Explain importance/relevance
Include all possible explanations
Discuss possible limitations of study
Suggest future work that could be done
Use past tense to describe your study and present tense to describe established knowledge from literature
Don't criticize other studies, contrast it with your work
Don't make conclusions not supported by your results
Stay focused and concise
Include key, relevant references
It is considered good manners to include an acknowledgements section

Additional resources: Annesley, T. M. (2010) The discussion section: your closing argument. Clinical Chemistry. 56(11):1671-4. PubMed ID: 20833779 Ng, K.H. and Peh, W.C. (2009) Writing the discussion. Singapore Medical Journal. 50(5):458-61. PubMed ID: 19495512

Tables & Figures: Durbin, C. G. (2004) Effective use of tables and figures in abstracts, presentations, and papers. Respiratory Care. 49(10): 1233-7. PubMed ID: 15447809 Ng, K. H. and Peh, W.C.G. (2009) Preparing effective tables. Singapore Medical Journal. (50)2: 117-9. PubMed ID: 19296024

Statistics: Ng, K. H. and Peh, W.C.G. (2009) Presenting the statistical results. Singapore Medical Journal. (50)1: 11-4. PubMed ID: 19224078

References: Peh, W.C.G. and Ng, K. H. (2009) Preparing the references. Singapore Medical Journal. (50)7: 11-4. PubMed ID: 19644619

Additional Resources

More from Elsevier Elsevier's Research Academy is an online tutorial to help with writing books, journals, and grants. It also includes information on citing sources, peer reviewing, and ethics in publishing
Research4Life Training Portal Research4Life provides downloadable instruction materials, including modules on authorship skills as well as other research related skills.
Coursera: Science Writing Coursera provides a wide variety of online courses for continuing education. You can search around for various courses on scientific writing or academic writing, and they're available to audit for free.

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How to Read a Scientific Paper: Structure of an Article

Structure of an Article
Online Tutorials

STOP: Reading a scientific article is not like reading a book, trying to plow right through is often overwhelming. Some of the research might be new to you or beyond your level of expertise. However, reading scientific articles is good practice to learn how to identify the important points and conclusions made by the authors and critically evaluate those ideas as well.

INSTEAD : Articles are meant to be skimmed and perused first. For example: look at the abstract, see if it interests you, jump to the discussion and conclusions, what did the authors learn? Do you want to know more then pop back to the methods and see how they did it or look at the results and see if the discussion accurately captures the findings.

The Abstract of an article is a short summary of the article's contents. Often it includes the focus, results, and conclusions of the study. Since the abstract does not contain all the information found in the article, it's best to view it as a tool for deciding if you should investigate the article further. An article's abstract will always be freely available to view.

Questions to ask while reading the abstract :

Does this interest me?
Is this related to my area of research?

Introduction and Literature Review

The Introduction of an article explains the idea being investigated, and gives background information if necessary. The introduction should also indicate why the study done in this particular article is unique, or how it adds to the overall discussion. The latter part of the introduction will also contain a literature review, this is a brief summary of related research that occurred before this article was written and that this article seeks to expand on.

Questions to ask while reading the introduction :

What is the author's goal in writing this article?
What area is the article building on?
How is this research unique?
Will this article tell me anything new?

Materials and Methods

The Materials and Methods of an article tells you how the study was performed. It should include the specific steps of the experiment or study, so as to be repeatable.

Questions to ask while reading materials and methods :

Is all the information present in order to repeat the experiment or study carried out?
Are the steps the authors took clearly explained?

The Results of an article should give an unbiased account of what the study's findings were, with data included.

Sometimes the Results and Discussion section (described next) are combined.

Questions to ask while reading the results:

Are the results presented in a factual and unbiased way?
Is data provided to complement the findings?
Is the data clear and understandable?

The Discussion of an article tells you what the researchers felt was significant about the results. This section contains an analysis of the data, and may point to facts and figures.

Questions to ask while reading the discussion:

Is the argument made by the authors supported by the data present in the results?
After reading the discussion do you find that more data should have been provided in the results?
Are there weaknesses in their argument?

The Conclusion of an article gives you the final thoughts of the researchers. It may reiterate what they noted in the discussion, or may be combined with the discussion. It may provide limitations present in the study or give recommendations for further research. This is the chance for the authors to clearly and succinctly state the ultimate finding or purpose of the article.

Questions to ask while reading the conclusion:

Is the conclusion valid?
Based on what you have read, what other research should be explored next?

The References of an article lists the works used in the research and writing of the article. Any articles mentioned in the introduction should be present here, as should any studies that were modeled in the materials and methods.

Question to ask while reviewing the references:

What other articles should I read?
What other authors are respected in this field?
What journals are frequently cited in this area?

Writing the Scientific Paper

When you write about scientific topics to specialists in a particular scientific field, we call that scientific writing. (When you write to non-specialists about scientific topics, we call that science writing.)

The scientific paper has developed over the past three centuries into a tool to communicate the results of scientific inquiry. The main audience for scientific papers is extremely specialized. The purpose of these papers is twofold: to present information so that it is easy to retrieve, and to present enough information that the reader can duplicate the scientific study. A standard format with six main part helps readers to find expected information and analysis:

Title--subject and what aspect of the subject was studied.
Abstract--summary of paper: The main reason for the study, the primary results, the main conclusions
Introduction-- why the study was undertaken
Methods and Materials-- how the study was undertaken
Results-- what was found
Discussion-- why these results could be significant (what the reasons might be for the patterns found or not found)

There are many ways to approach the writing of a scientific paper, and no one way is right. Many people, however, find that drafting chunks in this order works best: Results, Discussion, Introduction, Materials & Methods, Abstract, and, finally, Title.

The title should be very limited and specific. Really, it should be a pithy summary of the article's main focus.

"Renal disease susceptibility and hypertension are under independent genetic control in the fawn hooded rat"
"Territory size in Lincoln's Sparrows ( Melospiza lincolnii )"
"Replacement of deciduous first premolars and dental eruption in archaeocete whales"
"The Radio-Frequency Single-Electron Transistor (RF-SET): A Fast and Ultrasensitive Electrometer"

This is a summary of your article. Generally between 50-100 words, it should state the goals, results, and the main conclusions of your study. You should list the parameters of your study (when and where was it conducted, if applicable; your sample size; the specific species, proteins, genes, etc., studied). Think of the process of writing the abstract as taking one or two sentences from each of your sections (an introductory sentence, a sentence stating the specific question addressed, a sentence listing your main techniques or procedures, two or three sentences describing your results, and one sentence describing your main conclusion).

Example One

Hypertension, diabetes and hyperlipidemia are risk factors for life-threatening complications such as end-stage renal disease, coronary artery disease and stroke. Why some patients develop complications is unclear, but only susceptibility genes may be involved. To test this notion, we studied crosses involving the fawn-hooded rat, an animal model of hypertension that develops chronic renal failure. Here, we report the localization of two genes, Rf-1 and Rf-2 , responsible for about half of the genetic variation in key indices of renal impairment. In addition, we localize a gene, Bpfh-1 , responsible for about 26% of the genetic variation in blood pressure. Rf-1 strongly affects the risk of renal impairment, but has no significant effect on blood pressure. Our results show that susceptibility to a complication of hypertension is under at least partially independent genetic control from susceptibility to hypertension itself.

Brown, Donna M, A.P. Provoost, M.J. Daly, E.S. Lander, & H.J. Jacob. 1996. "Renal disease susceptibility and hypertension are under indpendent genetic control in the faun-hooded rat." Nature Genetics , 12(1):44-51.

Example Two

We studied survival of 220 calves of radiocollared moose ( Alces alces ) from parturition to the end of July in southcentral Alaska from 1994 to 1997. Prior studies established that predation by brown bears ( Ursus arctos ) was the primary cause of mortality of moose calves in the region. Our objectives were to characterize vulnerability of moose calves to predation as influenced by age, date, snow depths, and previous reproductive success of the mother. We also tested the hypothesis that survival of twin moose calves was independent and identical to that of single calves. Survival of moose calves from parturition through July was 0.27 ± 0.03 SE, and their daily rate of mortality declined at a near constant rate with age in that period. Mean annual survival was 0.22 ± 0.03 SE. Previous winter's snow depths or survival of the mother's previous calf was not related to neonatal survival. Selection for early parturition was evidenced in the 4 years of study by a 6.3% increase in the hazard of death with each daily increase in parturition date. Although there was no significant difference in survival of twin and single moose calves, most twins that died disappeared together during the first 15 days after birth and independently thereafter, suggesting that predators usually killed both when encountered up to that age.

Key words: Alaska, Alces alces , calf survival, moose, Nelchina, parturition synchrony, predation

Testa, J.W., E.F. Becker, & G.R. Lee. 2000. "Temporal patterns in the survival of twin and single moose ( alces alces ) calves in southcentral Alaska." Journal of Mammalogy , 81(1):162-168.

Example Three

We monitored breeding phenology and population levels of Rana yavapaiensis by use of repeated egg mass censuses and visual encounter surveys at Agua Caliente Canyon near Tucson, Arizona, from 1994 to 1996. Adult counts fluctuated erratically within each year of the study but annual means remained similar. Juvenile counts peaked during the fall recruitment season and fell to near zero by early spring. Rana yavapaiensis deposited eggs in two distinct annual episodes, one in spring (March-May) and a much smaller one in fall (September-October). Larvae from the spring deposition period completed metamorphosis in earlv summer. Over the two years of study, 96.6% of egg masses successfully produced larvae. Egg masses were deposited during periods of predictable, moderate stream flow, but not during seasonal periods when flash flooding or drought were likely to affect eggs or larvae. Breeding phenology of Rana yavapaiensis is particularly well suited for life in desert streams with natural flow regimes which include frequent flash flooding and drought at predictable times. The exotic predators of R. yavapaiensis are less able to cope with fluctuating conditions. Unaltered stream flow regimes that allow natural fluctuations in stream discharge may provide refugia for this declining ranid frog from exotic predators by excluding those exotic species that are unable to cope with brief flash flooding and habitat drying.

Sartorius, Shawn S., and Philip C. Rosen. 2000. "Breeding phenology of the lowland leopard frog ( Rana yavepaiensis )." Southwestern Naturalist , 45(3): 267-273.

Introduction

The introduction is where you sketch out the background of your study, including why you have investigated the question that you have and how it relates to earlier research that has been done in the field. It may help to think of an introduction as a telescoping focus, where you begin with the broader context and gradually narrow to the specific problem addressed by the report. A typical (and very useful) construction of an introduction proceeds as follows:

"Echimyid rodents of the genus Proechimys (spiny rats) often are the most abundant and widespread lowland forest rodents throughout much of their range in the Neotropics (Eisenberg 1989). Recent studies suggested that these rodents play an important role in forest dynamics through their activities as seed predators and dispersers of seeds (Adler and Kestrell 1998; Asquith et al 1997; Forget 1991; Hoch and Adler 1997)." (Lambert and Adler, p. 70)

"Our laboratory has been involved in the analysis of the HLA class II genes and their association with autoimmune disorders such as insulin-dependent diabetes mellitus. As part of this work, the laboratory handles a large number of blood samples. In an effort to minimize the expense and urgency of transportation of frozen or liquid blood samples, we have designed a protocol that will preserve the integrity of lymphocyte DNA and enable the transport and storage of samples at ambient temperatures." (Torrance, MacLeod & Hache, p. 64)

"Despite the ubiquity and abundance of P. semispinosus , only two previous studies have assessed habitat use, with both showing a generalized habitat use. [brief summary of these studies]." (Lambert and Adler, p. 70)

"Although very good results have been obtained using polymerase chain reaction (PCR) amplification of DNA extracted from dried blood spots on filter paper (1,4,5,8,9), this preservation method yields limited amounts of DNA and is susceptible to contamination." (Torrance, MacLeod & Hache, p. 64)

"No attempt has been made to quantitatively describe microhabitat characteristics with which this species may be associated. Thus, specific structural features of secondary forests that may promote abundance of spiny rats remains unknown. Such information is essential to understand the role of spiny rats in Neotropical forests, particularly with regard to forest regeneration via interactions with seeds." (Lambert and Adler, p. 71)

"As an alternative, we have been investigating the use of lyophilization ("freeze-drying") of whole blood as a method to preserve sufficient amounts of genomic DNA to perform PCR and Southern Blot analysis." (Torrance, MacLeod & Hache, p. 64)

"We present an analysis of microhabitat use by P. semispinosus in tropical moist forests in central Panama." (Lambert and Adler, p. 71)

"In this report, we summarize our analysis of genomic DNA extracted from lyophilized whole blood." (Torrance, MacLeod & Hache, p. 64)

Methods and Materials

In this section you describe how you performed your study. You need to provide enough information here for the reader to duplicate your experiment. However, be reasonable about who the reader is. Assume that he or she is someone familiar with the basic practices of your field.

It's helpful to both writer and reader to organize this section chronologically: that is, describe each procedure in the order it was performed. For example, DNA-extraction, purification, amplification, assay, detection. Or, study area, study population, sampling technique, variables studied, analysis method.

Include in this section:

study design: procedures should be listed and described, or the reader should be referred to papers that have already described the used procedure
particular techniques used and why, if relevant
modifications of any techniques; be sure to describe the modification
specialized equipment, including brand-names
temporal, spatial, and historical description of study area and studied population
assumptions underlying the study
statistical methods, including software programs

Example description of activity

Chromosomal DNA was denatured for the first cycle by incubating the slides in 70% deionized formamide; 2x standard saline citrate (SSC) at 70ºC for 2 min, followed by 70% ethanol at -20ºC and then 90% and 100% ethanol at room temperature, followed by air drying. (Rouwendal et al ., p. 79)

Example description of assumptions

We considered seeds left in the petri dish to be unharvested and those scattered singly on the surface of a tile to be scattered and also unharvested. We considered seeds in cheek pouches to be harvested but not cached, those stored in the nestbox to be larderhoarded, and those buried in caching sites within the arena to be scatterhoarded. (Krupa and Geluso, p. 99)

Examples of use of specialized equipment

Oligonucleotide primers were prepared using the Applied Biosystems Model 318A (Foster City, CA) DNA Synthesizer according to the manufacturers' instructions. (Rouwendal et al ., p.78)
We first visually reviewed the complete song sample of an individual using spectrograms produced on a Princeton Applied Research Real Time Spectrum Analyzer (model 4512). (Peters et al ., p. 937)

Example of use of a certain technique

Frogs were monitored using visual encounter transects (Crump and Scott, 1994). (Sartorius and Rosen, p. 269)

Example description of statistical analysis

We used Wilcox rank-sum tests for all comparisons of pre-experimental scores and for all comparisons of hue, saturation, and brightness scores between various groups of birds ... All P -values are two-tailed unless otherwise noted. (Brawner et al ., p. 955)

This section presents the facts--what was found in the course of this investigation. Detailed data--measurements, counts, percentages, patterns--usually appear in tables, figures, and graphs, and the text of the section draws attention to the key data and relationships among data. Three rules of thumb will help you with this section:

present results clearly and logically
avoid excess verbiage
consider providing a one-sentence summary at the beginning of each paragraph if you think it will help your reader understand your data

Remember to use table and figures effectively. But don't expect these to stand alone.

Some examples of well-organized and easy-to-follow results:

Size of the aquatic habitat at Agua Caliente Canyon varied dramatically throughout the year. The site contained three rockbound tinajas (bedrock pools) that did not dry during this study. During periods of high stream discharge seven more seasonal pools and intermittent stretches of riffle became available. Perennial and seasonal pool levels remained stable from late February through early May. Between mid-May and mid-July seasonal pools dried until they disappeared. Perennial pools shrank in surface area from a range of 30-60 m² to 3-5- M². (Sartorius and Rosen, Sept. 2000: 269)

Notice how the second sample points out what is important in the accompanying figure. It makes us aware of relationships that we may not have noticed quickly otherwise and that will be important to the discussion.

A similar test result is obtained with a primer derived from the human ß-satellite... This primer (AGTGCAGAGATATGTCACAATG-CCCC: Oligo 435) labels 6 sites in the PRINS reaction: the chromosomes 1, one pair of acrocentrics and, more weakly, the chromosomes 9 (Fig. 2a). After 10 cycles of PCR-IS, the number of sites labeled has doubled (Fig. 2b); after 20 cycles, the number of sites labeled is the same but the signals are stronger (Fig. 2c) (Rouwendal et al ., July 93:80).

Related Information: Use Tables and Figures Effectively

Do not repeat all of the information in the text that appears in a table, but do summarize it. For example, if you present a table of temperature measurements taken at various times, describe the general pattern of temperature change and refer to the table.

"The temperature of the solution increased rapidly at first, going from 50º to 80º in the first three minutes (Table 1)."

You don't want to list every single measurement in the text ("After one minute, the temperature had risen to 55º. After two minutes, it had risen to 58º," etc.). There is no hard and fast rule about when to report all measurements in the text and when to put the measurements in a table and refer to them, but use your common sense. Remember that readers have all that data in the accompanying tables and figures, so your task in this section is to highlight key data, changes, or relationships.

In this section you discuss your results. What aspect you choose to focus on depends on your results and on the main questions addressed by them. For example, if you were testing a new technique, you will want to discuss how useful this technique is: how well did it work, what are the benefits and drawbacks, etc. If you are presenting data that appear to refute or support earlier research, you will want to analyze both your own data and the earlier data--what conditions are different? how much difference is due to a change in the study design, and how much to a new property in the study subject? You may discuss the implication of your research--particularly if it has a direct bearing on a practical issue, such as conservation or public health.

This section centers on speculation . However, this does not free you to present wild and haphazard guesses. Focus your discussion around a particular question or hypothesis. Use subheadings to organize your thoughts, if necessary.

This section depends on a logical organization so readers can see the connection between your study question and your results. One typical approach is to make a list of all the ideas that you will discuss and to work out the logical relationships between them--what idea is most important? or, what point is most clearly made by your data? what ideas are subordinate to the main idea? what are the connections between ideas?

Achieving the Scientific Voice

Eight tips will help you match your style for most scientific publications.

Develop a precise vocabulary: read the literature to become fluent, or at least familiar with, the sort of language that is standard to describe what you're trying to describe.
Once you've labeled an activity, a condition, or a period of time, use that label consistently throughout the paper. Consistency is more important than creativity.
Define your terms and your assumptions.
Include all the information the reader needs to interpret your data.
Remember, the key to all scientific discourse is that it be reproducible . Have you presented enough information clearly enough that the reader could reproduce your experiment, your research, or your investigation?
When describing an activity, break it down into elements that can be described and labeled, and then present them in the order they occurred.
When you use numbers, use them effectively. Don't present them so that they cause more work for the reader.
Include details before conclusions, but only include those details you have been able to observe by the methods you have described. Do not include your feelings, attitudes, impressions, or opinions.
Research your format and citations: do these match what have been used in current relevant journals?
Run a spellcheck and proofread carefully. Read your paper out loud, and/ or have a friend look over it for misspelled words, missing words, etc.

Applying the Principles, Example 1

The following example needs more precise information. Look at the original and revised paragraphs to see how revising with these guidelines in mind can make the text clearer and more informative:

Before: Each male sang a definite number of songs while singing. They start with a whistle and then go from there. Each new song is always different, but made up an overall repertoire that was completed before starting over again. In 16 cases (84%), no new songs were sung after the first 20, even though we counted about 44 songs for each bird.

After: Each male used a discrete number of song types in his singing. Each song began with an introductory whistle, followed by a distinctive, complex series of fluty warbles (Fig. 1). Successive songs were always different, and five of the 19 males presented their entire song repertoire before repeating any of their song types (i.e., the first IO recorded songs revealed the entire repertoire of 10 song types). Each song type recurred in long sequences of singing, so that we could be confident that we had recorded the entire repertoire of commonly used songs by each male. For 16 of the 19 males, no new song types were encountered after the first 20 songs, even though we analyzed and average of 44 songs/male (range 30-59).

Applying the Principles, Example 2

In this set of examples, even a few changes in wording result in a more precise second version. Look at the original and revised paragraphs to see how revising with these guidelines in mind can make the text clearer and more informative:

Before: The study area was on Mt. Cain and Maquilla Peak in British Columbia, Canada. The study area is about 12,000 ha of coastal montane forest. The area is both managed and unmanaged and ranges from 600-1650m. The most common trees present are mountain hemlock ( Tsuga mertensiana ), western hemlock ( Tsuga heterophylla ), yellow cedar ( Chamaecyparis nootkatensis ), and amabilis fir ( Abies amabilis ).

After: The study took place on Mt. Cain and Maquilla Peak (50'1 3'N, 126'1 8'W), Vancouver Island, British Columbia. The study area encompassed 11,800 ha of coastal montane forest. The landscape consisted of managed and unmanaged stands of coastal montane forest, 600-1650 m in elevation. The dominant tree species included mountain hemlock ( Tsuga mertensiana ), western hemlock ( Tsuga heterophylla ), yellow cedar ( Chamaecyparis nootkatensis ), and amabilis fir ( Abies amabilis ).

Two Tips for Sentence Clarity

Although you will want to consider more detailed stylistic revisions as you become more comfortable with scientific writing, two tips can get you started:

First, the verb should follow the subject as soon as possible.

Really Hard to Read : "The smallest of the URF's (URFA6L), a 207-nucleotide (nt) reading frame overlapping out of phase the NH2- terminal portion of the adenosinetriphosphatase (ATPase) subunit 6 gene has been identified as the animal equivalent of the recently discovered yeast H+-ATPase subunit gene."

Less Hard to Read : "The smallest of the UR-F's is URFA6L, a 207-nucleotide (nt) reading frame overlapping out of phase the NH2-terminal portion of the adenosinetriphosphatase (ATPase) subunit 6 gene; it has been identified as the animal equivalent of the recently discovered yeast H+-ATPase subunit 8 gene."

Second, place familiar information first in a clause, a sentence, or a paragraph, and put the new and unfamiliar information later.

More confusing : The epidermis, the dermis, and the subcutaneous layer are the three layers of the skin. A layer of dead skin cells makes up the epidermis, which forms the body's shield against the world. Blood vessels, carrying nourishment, and nerve endings, which relay information about the outside world, are found in the dermis. Sweat glands and fat cells make up the third layer, the subcutaneous layer.

Less confusing : The skin consists of three layers: the epidermis, the dermis, and the subcutaneous layer. The epidermis is made up of dead skin cells, and forms a protective shield between the body and the world. The dermis contains the blood vessels and nerve endings that nourish the skin and make it receptive to outside stimuli. The subcutaneous layer contains the sweat glands and fat cells which perform other functions of the skin.

Bibliography

Scientific Writing for Graduate Students . F. P. Woodford. Bethesda, MD: Council of Biology Editors, 1968. [A manual on the teaching of writing to graduate students--very clear and direct.]
Scientific Style and Format . Council of Biology Editors. Cambridge: Cambridge University Press, 1994.
"The science of scientific writing." George Gopen and Judith Swann. The American Scientist , Vol. 78, Nov.-Dec. 1990. Pp 550-558.
"What's right about scientific writing." Alan Gross and Joseph Harmon. The Scientist , Dec. 6 1999. Pp. 20-21.
"A Quick Fix for Figure Legends and Table Headings." Donald Kroodsma. The Auk , 117 (4): 1081-1083, 2000.

Wortman-Wunder, Emily, & Kate Kiefer. (1998). Writing the Scientific Paper. Writing@CSU . Colorado State University. https://writing.colostate.edu/resources/writing/guides/.

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Writing Research Papers

Research Paper Structure

Whether you are writing a B.S. Degree Research Paper or completing a research report for a Psychology course, it is highly likely that you will need to organize your research paper in accordance with American Psychological Association (APA) guidelines. Here we discuss the structure of research papers according to APA style.

Major Sections of a Research Paper in APA Style

A complete research paper in APA style that is reporting on experimental research will typically contain a Title page, Abstract, Introduction, Methods, Results, Discussion, and References sections. 1 Many will also contain Figures and Tables and some will have an Appendix or Appendices. These sections are detailed as follows (for a more in-depth guide, please refer to " How to Write a Research Paper in APA Style ”, a comprehensive guide developed by Prof. Emma Geller). 2

What is this paper called and who wrote it? – the first page of the paper; this includes the name of the paper, a “running head”, authors, and institutional affiliation of the authors. The institutional affiliation is usually listed in an Author Note that is placed towards the bottom of the title page. In some cases, the Author Note also contains an acknowledgment of any funding support and of any individuals that assisted with the research project.

One-paragraph summary of the entire study – typically no more than 250 words in length (and in many cases it is well shorter than that), the Abstract provides an overview of the study.

Introduction

What is the topic and why is it worth studying? – the first major section of text in the paper, the Introduction commonly describes the topic under investigation, summarizes or discusses relevant prior research (for related details, please see the Writing Literature Reviews section of this website), identifies unresolved issues that the current research will address, and provides an overview of the research that is to be described in greater detail in the sections to follow.

What did you do? – a section which details how the research was performed. It typically features a description of the participants/subjects that were involved, the study design, the materials that were used, and the study procedure. If there were multiple experiments, then each experiment may require a separate Methods section. A rule of thumb is that the Methods section should be sufficiently detailed for another researcher to duplicate your research.

What did you find? – a section which describes the data that was collected and the results of any statistical tests that were performed. It may also be prefaced by a description of the analysis procedure that was used. If there were multiple experiments, then each experiment may require a separate Results section.

What is the significance of your results? – the final major section of text in the paper. The Discussion commonly features a summary of the results that were obtained in the study, describes how those results address the topic under investigation and/or the issues that the research was designed to address, and may expand upon the implications of those findings. Limitations and directions for future research are also commonly addressed.

List of articles and any books cited – an alphabetized list of the sources that are cited in the paper (by last name of the first author of each source). Each reference should follow specific APA guidelines regarding author names, dates, article titles, journal titles, journal volume numbers, page numbers, book publishers, publisher locations, websites, and so on (for more information, please see the Citing References in APA Style page of this website).

Tables and Figures

Graphs and data (optional in some cases) – depending on the type of research being performed, there may be Tables and/or Figures (however, in some cases, there may be neither). In APA style, each Table and each Figure is placed on a separate page and all Tables and Figures are included after the References. Tables are included first, followed by Figures. However, for some journals and undergraduate research papers (such as the B.S. Research Paper or Honors Thesis), Tables and Figures may be embedded in the text (depending on the instructor’s or editor’s policies; for more details, see "Deviations from APA Style" below).

Supplementary information (optional) – in some cases, additional information that is not critical to understanding the research paper, such as a list of experiment stimuli, details of a secondary analysis, or programming code, is provided. This is often placed in an Appendix.

Variations of Research Papers in APA Style

Although the major sections described above are common to most research papers written in APA style, there are variations on that pattern. These variations include:

Literature reviews – when a paper is reviewing prior published research and not presenting new empirical research itself (such as in a review article, and particularly a qualitative review), then the authors may forgo any Methods and Results sections. Instead, there is a different structure such as an Introduction section followed by sections for each of the different aspects of the body of research being reviewed, and then perhaps a Discussion section.
Multi-experiment papers – when there are multiple experiments, it is common to follow the Introduction with an Experiment 1 section, itself containing Methods, Results, and Discussion subsections. Then there is an Experiment 2 section with a similar structure, an Experiment 3 section with a similar structure, and so on until all experiments are covered. Towards the end of the paper there is a General Discussion section followed by References. Additionally, in multi-experiment papers, it is common for the Results and Discussion subsections for individual experiments to be combined into single “Results and Discussion” sections.

Departures from APA Style

In some cases, official APA style might not be followed (however, be sure to check with your editor, instructor, or other sources before deviating from standards of the Publication Manual of the American Psychological Association). Such deviations may include:

Placement of Tables and Figures – in some cases, to make reading through the paper easier, Tables and/or Figures are embedded in the text (for example, having a bar graph placed in the relevant Results section). The embedding of Tables and/or Figures in the text is one of the most common deviations from APA style (and is commonly allowed in B.S. Degree Research Papers and Honors Theses; however you should check with your instructor, supervisor, or editor first).
Incomplete research – sometimes a B.S. Degree Research Paper in this department is written about research that is currently being planned or is in progress. In those circumstances, sometimes only an Introduction and Methods section, followed by References, is included (that is, in cases where the research itself has not formally begun). In other cases, preliminary results are presented and noted as such in the Results section (such as in cases where the study is underway but not complete), and the Discussion section includes caveats about the in-progress nature of the research. Again, you should check with your instructor, supervisor, or editor first.
Class assignments – in some classes in this department, an assignment must be written in APA style but is not exactly a traditional research paper (for instance, a student asked to write about an article that they read, and to write that report in APA style). In that case, the structure of the paper might approximate the typical sections of a research paper in APA style, but not entirely. You should check with your instructor for further guidelines.

Workshops and Downloadable Resources

For in-person discussion of the process of writing research papers, please consider attending this department’s “Writing Research Papers” workshop (for dates and times, please check the undergraduate workshops calendar).

Downloadable Resources

How to Write APA Style Research Papers (a comprehensive guide) [ PDF ]
Tips for Writing APA Style Research Papers (a brief summary) [ PDF ]
Example APA Style Research Paper (for B.S. Degree – empirical research) [ PDF ]
Example APA Style Research Paper (for B.S. Degree – literature review) [ PDF ]

Further Resources

How-To Videos

Writing Research Paper Videos

APA Journal Article Reporting Guidelines

Appelbaum, M., Cooper, H., Kline, R. B., Mayo-Wilson, E., Nezu, A. M., & Rao, S. M. (2018). Journal article reporting standards for quantitative research in psychology: The APA Publications and Communications Board task force report . American Psychologist , 73 (1), 3.
Levitt, H. M., Bamberg, M., Creswell, J. W., Frost, D. M., Josselson, R., & Suárez-Orozco, C. (2018). Journal article reporting standards for qualitative primary, qualitative meta-analytic, and mixed methods research in psychology: The APA Publications and Communications Board task force report . American Psychologist , 73 (1), 26.

External Resources

Formatting APA Style Papers in Microsoft Word
How to Write an APA Style Research Paper from Hamilton University
WikiHow Guide to Writing APA Research Papers
Sample APA Formatted Paper with Comments
Sample APA Formatted Paper
Tips for Writing a Paper in APA Style

1 VandenBos, G. R. (Ed). (2010). Publication manual of the American Psychological Association (6th ed.) (pp. 41-60). Washington, DC: American Psychological Association.

2 geller, e. (2018). how to write an apa-style research report . [instructional materials]. , prepared by s. c. pan for ucsd psychology.

Formatting Research Papers
Using Databases and Finding References
What Types of References Are Appropriate?
Evaluating References and Taking Notes
Citing References
Writing a Literature Review
Writing Process and Revising
Improving Scientific Writing
Academic Integrity and Avoiding Plagiarism
Writing Research Papers Videos

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Reading Scientific Articles
PPT
Mastering the 9 Parts of a Research Paper: Your Ultimate Guide
Research Paper: Definition, Structure, Characteristics, and Types
Visualization of research paper parts

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A complete research paper in APA style that is reporting on experimental research will typically contain a Title page, Abstract, Introduction, Methods, Results

How to Write a Research Paper

Start the Research Process

Develop Your Thesis Statement

Create an Outline

Organize Your Notes

Write Your Final Draft

Scientific Papers

The introduction

Context and need

Task and object

Materials and methods

The conclusion

The abstract

Topic rooms within Scientific Communication

Visual Browse

Scientific and Scholarly Writing

Parts of a Scientific & Scholarly Paper

BSCI 1510L Literature and Stats Guide: 3.2 Components of a scientific paper

3.2 Components of a scientific paper

3.2.1 Abstract

3.2.2 Introduction

3.2.3 Methods (taken verbatim from Steingraber et al. 1985)

3.2.4 Results (with excerpts from Steingraber et al. 1985)

3.2.4.1 Tables

3.2.4.2. Figures

3.2.5 Discussion (taken from Steingraber et al. 1985)

3.2.6 Title

3.2.7 Literature Cited

Conducting Research

Using Databases

Finding & Accessing

Writing & Citing

Meet a Librarian

Search Services

Citation Mgmt

Scholarly Communications

Library Updates

Scientific Writing: Sections of a Paper

Additional Resources

University Library, University of Illinois at Urbana-Champaign

How to Read a Scientific Paper: Structure of an Article

Introduction and Literature Review

Materials and Methods

Suggested Further Reading

Writing the Scientific Paper

Example One

Example Two

Example Three

Introduction

Methods and Materials

Example description of activity

Example description of assumptions

Examples of use of specialized equipment

Example of use of a certain technique

Example description of statistical analysis

Achieving the Scientific Voice

Applying the Principles, Example 1

Applying the Principles, Example 2

Two Tips for Sentence Clarity

Bibliography

Writing Research Papers

Major Sections of a Research Paper in APA Style

Introduction

Tables and Figures

Variations of Research Papers in APA Style

Departures from APA Style

Workshops and Downloadable Resources

Further Resources

1 VandenBos, G. R. (Ed). (2010). Publication manual of the American Psychological Association (6th ed.) (pp. 41-60). Washington, DC: American Psychological Association.

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